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    Immunofluorescence on paraffin sections

    Miquel Vila

    Published: 2023-10-18 DOI: 10.17504/protocols.io.36wgq3m3klk5/v1
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    Abstract

    Immunofluorescence protocol on paraffin-embedded rodent brain sections

    Steps

    1. Deparaffinization and hydratation :

    1.

    Put the slides 30 min in the incubator at 60ºC

    2.

    Wash 3x3 min in xylene

    3.

    Wash 1x10 min in ethanol 100%

    4.

    Wash 1x10 min in ethanol 95%

    5.

    Wash 1x5 min in ethanol 70%

    6.

    Wash 2x5 min in PBS 1X

    Note
    IMPORTANT : The buffer used for immunofluorescence is PBS, not TBS as for immunohistochemistry and the endogenous peroxidase blocking step is not required.

    Antigen retrieval

    7.

    Incubate slides in citrate buffer 10mM, pH 6 in a boiling water bath (95ºC) for 20 min

    8.

    Let sections cool down for 20 min at room temperature (RT)

    Washing

    9.

    Wash 3x5 min in PBS 1X-Triton (0.5%)

    Blocking

    10.

    Put wet paper in a black box for immunohistochemistry

    11.

    Gently dry and circle sections with the hydrophobic pen ImmEdge Vector H 4000 without touching the tissue

    12.

    Add 200 uL/section of blocking solution (5% NGS (in PBS 1X) (200uL/section) + 0.1% Triton (in PBS 1X)) 1h at RT

    1ary antibody

    13.

    Gently wipe off the water ofthe slides

    14.

    Put 200ul/section of 1ary antibody in 2% NGS + 0.1% Triton overnight at 4ºC (cold room)

    Washing

    15.

    Wash 3x5min in PBS 1X-Triton (0.5%)

    2ary antibody

    16.

    Gently wipe off the water ofthe slides

    17.

    Put 200ul/section of 2ary antibody in 2% NGS + 0.1% Triton + Hoechst/DAPI for 1 h at RT

    18.

    Wash 3x5min in PBS 1X

    Mounting

    19.

    Mount sections with fluorescent mounting medium. Put the coverslip (washed with ethanol previously) on the slide. Remove bubbles

    Storage

    20.

    Let dry the slides on the tray in the hood for 5 minutes and store at 4ºC asap

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