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    Purification protocol of Mouse (Mus Musculus) E1-like enzyme ATG7

    Dorotea Fracchiolla

    Published: 2021-10-28 DOI: 10.17504/protocols.io.bsennbde
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    Abstract

    This protocol outlines the procedures for expression and purification of Mouse ( Mus Musculus ) E1-like enzyme ATG7 (AuTophaGy-related protein) of the ATG8 ubiquitin-like conjugation system in autophagy.

    Attachments

    ASAP_Team_Hurley_Martens_lab_Dorotea_Fracchiolla_Exp_purif_mATG7.pdf

    Steps

    Infection/expression/harvest

    1.

    Infect 1L of Sf9 cells growing in Sf921 medium with Penicillin/Streptomycin at 1-1.5 mil/ml cells/volume at 99-100% viability in log phase with Virus 1 (V1) according to viral titer.

    (NOTE: protein yield from 1 lt culture is high, e.i. 32 mg/1lt culture).

    2.

    Monitor infection and harvest cells when viability goes to 97-98%.

    Note
    Always check under microscope: when all alive cells are brightly fluorescent and only few dead -> harvest!

    Protein Purification

    3.

    Note
    This section describes the procedure for His-Trap affinity purification followed by Size Exclusion Chromatography. All steps are to be executed at 4°C or on ice.

    4.

    Resuspend cell pellet corresponding to 1L in 50mL; gently stir at 4°C until pellet dissolves avoiding bubbling.

    5.

    Additionally, mechanically lyse the cells passing them through a pre-cooled douncer for 3x (10x pestle A followed by 10x pestle B).

    6.

    Clear the lysate by spinning it in a Backman centrifuge, at 25K using a Ti45 Rotor for 0h 45m 0s at 4°C.

    7.

    Inject the supernatant onto a 5ml HT column pre-equilibrated with Buffer A at 1ml/min flow rate to allow protein binding.

    8.

    Wash the column for 5CV with Buffer A at 2 ml/min flow rate to remove unspecific bound proteins.

    9.

    Elute protein through a step elution gradient in 50mM, 75mM, 100mM, 150mM, 200mM and 300mM Imidazole concentration. Perform the elution at 1ml/min flow rate.

    10.

    Collect a sample from peak fractions of each elution step and check them on a SDS-PAGE (see gel in the "Guidelines" section). Pool and concentrate fractions corresponding to the peak containing the protein of interest (usually 200mM and/or 300mM Imid.) by spinning them down at4°C using a 30 kDa cut-off Amicon Filter to 2 ml in a 5810R centrifuge (Eppendorf).

    Note
    Keep centrifugation steps short (0h 5m 0s) to avoid protein local concentration/aggregation on the filter.

    11.

    Inject 2mL onto a S200_16/60 column at 44°C pre-equilibrated in buffer containing 25mM Hepes pH=7.5, 150mM NaCl and 1mM DTT (see profile in the "Guidelines" section).

    12.

    Check fractions on a 10% SDS-PAGE (see gel in the "Guidelines" section), pool and concentrate down those containing the protein of interest by spinning them at 4°C using a 30kDa cut-off Amicon Filter in a 5810R centrifuge (Eppendorf). Protein elutes at around 72.5ml, a retention volume corresponding to that of a dimeric globular protein of ~150-160 kDa.

    Note
    Keep centrifugation steps short to avoid protein precipitation.

    13.

    Measure protein absorbance at A280 is measured with Spectrophotometer against Size Exclusion Chromatography buffer.

    14.

    Aliquot the protein, snap freeze it in liquid Nitrogen and store it at -80°C.

    Note
    Usually protein activity is kept for 18 months when stored at -80°C.

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